rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment.

Version: 1.0.2
Depends: R (≥ 3.3.0), ape, ggplot2
Imports: reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel
Suggests: knitr, testthat, rmarkdown
Published: 2019-02-15
Author: Dan Warren [aut, cre], Anthony Geneva [aut], Rob Lanfear [aut], Luke Harmon [ctb], April Wright [ctb], Diego Mallo [ctb], Klaus Schliep [ctb]
Maintainer: Dan Warren <dan.l.warren at gmail.com>
License: GPL-2
NeedsCompilation: no
Citation: rwty citation info
CRAN checks: rwty results

Downloads:

Reference manual: rwty.pdf
Vignettes: rwty
Package source: rwty_1.0.2.tar.gz
Windows binaries: r-devel: rwty_1.0.2.zip, r-devel-gcc8: rwty_1.0.2.zip, r-release: rwty_1.0.2.zip, r-oldrel: rwty_1.0.2.zip
OS X binaries: r-release: rwty_1.0.2.tgz, r-oldrel: rwty_1.0.2.tgz
Old sources: rwty archive

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