plasma: Partial LeAst Squares for Multiomic Analysis

Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) <doi:10.1101/2023.03.10.532096>.

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: methods, stats, graphics, survival, pls, plsRcox, Polychrome (≥ 1.5.0), viridisLite, beanplot, oompaBase
Suggests: R.rsp, tidyr, ClassDiscovery
Published: 2023-03-13
Author: Kevin R. Coombes [cre, aut], Kyoko Yamaguchi [aut], Salma Abdelbaky [aut]
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Apache License (== 2.0)
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
Materials: NEWS
CRAN checks: plasma results

Documentation:

Reference manual: plasma.pdf
Vignettes: plasma: Interpretation
plasma: Partial LeAst Squares for Multiomics Analysis

Downloads:

Package source: plasma_1.0.0.tar.gz
Windows binaries: r-devel: plasma_1.0.0.zip, r-release: plasma_1.0.0.zip, r-oldrel: plasma_1.0.0.zip
macOS binaries: r-release (arm64): plasma_1.0.0.tgz, r-oldrel (arm64): plasma_1.0.0.tgz, r-release (x86_64): plasma_1.0.0.tgz
Old sources: plasma archive

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