nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version: 1.4.1
Imports: ape, coda, deSolve, testit
Suggests: DDD, ggplot2, Hmisc, knitr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, TreeSim
Published: 2019-05-18
Author: Thijs Janzen [aut, cre], Richel Bilderbeek [aut]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/richelbilderbeek/nLTT/issues
License: GPL-2
URL: https://github.com/richelbilderbeek/nLTT
NeedsCompilation: no
CRAN checks: nLTT results

Downloads:

Reference manual: nLTT.pdf
Vignettes: How to visualize nLTT values distributions
nltt_diff functions
How to plot multiple nLTTs and their average
How to stretch an nLTT timepoints matrix
Trees with a root edge
Walkthrough
Package source: nLTT_1.4.1.tar.gz
Windows binaries: r-devel: nLTT_1.4.1.zip, r-devel-gcc8: nLTT_1.4.1.zip, r-release: nLTT_1.4.1.zip, r-oldrel: nLTT_1.4.1.zip
OS X binaries: r-release: nLTT_1.4.1.tgz, r-oldrel: nLTT_1.4.1.tgz
Old sources: nLTT archive

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