epos: Epilepsy Ontologies' Similarities

Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the BioASQ corpus. The ranked result lists of neurological drug terms co-occurring with terms from the epilepsy ontologies EpSO, ESSO, EPILONT, EPISEM and FENICS undergo further analysis. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) <doi:10.4126/FRL01-006408558>, Mueller, Bernd et al. (2017) <doi:10.1007/978-3-319-58694-6_22> and Mueller, Bernd and Rebholz-Schuhmann, Dietrich (2020) <doi:10.1007/978-3-030-43887-6_52>.

Version: 1.0
Depends: R (≥ 3.6.0)
Imports: hash, ggplot2, testthat, gridExtra, TopKLists, stringr, xtable, mongolite, stats, VennDiagram, cowplot
Suggests: knitr, rmarkdown
Published: 2021-02-20
Author: Bernd Mueller
Maintainer: Bernd Mueller <bernd.mueller at zbmed.de>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: epos results


Reference manual: epos.pdf
Package source: epos_1.0.tar.gz
Windows binaries: r-devel: epos_1.0.zip, r-release: epos_0.1.3.zip, r-oldrel: epos_0.1.3.zip
macOS binaries: r-release: epos_1.0.tgz, r-oldrel: epos_0.1.3.tgz
Old sources: epos archive


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