MigConnectivity: Estimate Migratory Connectivity for Migratory Animals

Allows the user to estimate transition probabilities for migratory animals between any two phases of the annual cycle, using a variety of different data types. Also quantifies the strength of migratory connectivity (MC), a standardized metric to quantify the extent to which populations co-occur between two phases of the annual cycle. Includes functions to estimate MC and the more traditional metric of migratory connectivity strength (Mantel correlation) incorporating uncertainty from multiple sources of sampling error. For cross-species comparisons, methods are provided to estimate differences in migratory connectivity strength, incorporating uncertainty. See Cohen et al. (2018) <doi:10.1111/2041-210X.12916>, Cohen et al. (2019) <doi:10.1111/ecog.03974>, and Roberts et al. (2023) <doi:10.1002/eap.2788> for details on some of these methods.

Version: 0.4.7
Depends: R (≥ 3.5.0)
Imports: coda, geodist, gplots, graphics, grDevices, MASS, methods, ncf, R2jags, RMark (≥ 2.1.14), sf, shape, stats, terra, utils, VGAM
Suggests: knitr, maps, rmarkdown, testthat
Published: 2024-03-26
Author: Jeffrey A. Hostetler [cre, aut], Michael T. Hallworth [aut], Clark S. Rushing [ctb], Emily B. Cohen [ctb], Valentine Herrmann [ctb]
Maintainer: Jeffrey A. Hostetler <jhostetler at usgs.gov>
License: GPL (≥ 3)
URL: https://github.com/SMBC-NZP/MigConnectivity
NeedsCompilation: no
SystemRequirements: JAGS (https://mcmc-jags.sourceforge.net)
Materials: README NEWS
CRAN checks: MigConnectivity results

Documentation:

Reference manual: MigConnectivity.pdf
Vignettes: MigConnectivity package
MigConnectivity package (older functionality)
'MigConnectivity' package: isotope simulation

Downloads:

Package source: MigConnectivity_0.4.7.tar.gz
Windows binaries: r-devel: MigConnectivity_0.4.7.zip, r-release: MigConnectivity_0.4.7.zip, r-oldrel: MigConnectivity_0.4.7.zip
macOS binaries: r-release (arm64): MigConnectivity_0.4.7.tgz, r-oldrel (arm64): MigConnectivity_0.4.7.tgz, r-release (x86_64): MigConnectivity_0.4.7.tgz
Old sources: MigConnectivity archive

Linking:

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