Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile

The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.

Version: 1.0.0
Depends: R (≥ 4.2.0)
Imports: limma, clusterProfiler, dplyr, org.Mm.eg.db, pheatmap, stringr, stats, utils, grDevices
Published: 2023-09-04
Author: Yuchen Sun [aut, cre]
Maintainer: Yuchen Sun <yuchensun2436 at 163.com>
License: Artistic-2.0
NeedsCompilation: no
CRAN checks: Grouphmap results

Documentation:

Reference manual: Grouphmap.pdf

Downloads:

Package source: Grouphmap_1.0.0.tar.gz
Windows binaries: r-prerel: Grouphmap_1.0.0.zip, r-release: Grouphmap_1.0.0.zip, r-oldrel: Grouphmap_1.0.0.zip
macOS binaries: r-prerel (arm64): not available, r-release (arm64): Grouphmap_1.0.0.tgz, r-oldrel (arm64): Grouphmap_1.0.0.tgz, r-prerel (x86_64): Grouphmap_1.0.0.tgz, r-release (x86_64): not available

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