CRAN Package Check Results for Package data.tree

Last updated on 2018-12-16 15:46:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.8 6.57 106.40 112.97 OK
r-devel-linux-x86_64-debian-gcc 0.7.8 5.21 79.91 85.12 OK
r-devel-linux-x86_64-fedora-clang 0.7.8 126.46 OK
r-devel-linux-x86_64-fedora-gcc 0.7.8 126.38 OK
r-devel-windows-ix86+x86_64 0.7.8 18.00 166.00 184.00 OK
r-patched-linux-x86_64 0.7.8 5.12 86.95 92.07 ERROR
r-patched-solaris-x86 0.7.8 174.00 WARN
r-release-linux-x86_64 0.7.8 6.62 87.58 94.20 ERROR
r-release-windows-ix86+x86_64 0.7.8 25.00 171.00 196.00 OK
r-release-osx-x86_64 0.7.8 WARN
r-oldrel-windows-ix86+x86_64 0.7.8 22.00 183.00 205.00 OK
r-oldrel-osx-x86_64 0.7.8 WARN

Check Details

Version: 0.7.8
Check: examples
Result: ERROR
    Running examples in ‘data.tree-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: GetPhyloNr
    > ### Title: Determine the number a 'Node' has after conversion to a phylo
    > ### object
    > ### Aliases: GetPhyloNr
    >
    > ### ** Examples
    >
    > library(ape)
    > library(data.tree)
    > data(acme)
    > ap <- as.phylo(acme)
    Error in UseMethod("as.phylo") :
     no applicable method for 'as.phylo' applied to an object of class "c('Node', 'R6')"
    Calls: as.phylo
    Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 502-504 (data.tree.Rmd)
    Error: processing vignette ‘data.tree.Rmd’ failed with diagnostics:
    no applicable method for ‘as.igraph’ applied to an object of class "c('Node', 'R6')"
    Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.7.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshot2dd96169dbd5.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshot2dd96169dbd5.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.7.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
    Warning in normalizePath(f2) :
     path[1]="./webshot103a141f06b14.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file './webshot103a141f06b14.png': No such file or directory
    Quitting from lines 512-515 (data.tree.Rmd)
    Error: processing vignette 'data.tree.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64