CRAN Package Check Results for Package Seurat

Last updated on 2020-08-06 17:49:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.2.0 122.46 396.98 519.44 NOTE
r-devel-linux-x86_64-debian-gcc 3.2.0 99.38 292.91 392.29 NOTE
r-devel-linux-x86_64-fedora-clang 3.2.0 731.06 NOTE
r-devel-linux-x86_64-fedora-gcc 3.2.0 733.26 NOTE
r-devel-windows-ix86+x86_64 3.2.0 310.00 650.00 960.00 NOTE
r-patched-linux-x86_64 3.2.0 109.41 389.23 498.64 NOTE
r-patched-solaris-x86 3.2.0 729.00 ERROR
r-release-linux-x86_64 3.2.0 100.88 391.35 492.23 NOTE
r-release-macos-x86_64 3.2.0 NOTE
r-release-windows-ix86+x86_64 3.2.0 294.00 687.00 981.00 NOTE
r-oldrel-macos-x86_64 3.2.0 NOTE
r-oldrel-windows-ix86+x86_64 3.2.0 195.00 571.00 766.00 NOTE

Check Details

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'loomR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'loomR', 'MAST', 'monocle'
    
    Imports includes 39 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 3.2.0
Check: installed package size
Result: NOTE
     installed size is 9.6Mb
     sub-directories of 1Mb or more:
     R 1.2Mb
     libs 7.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'loomR', 'MAST', 'monocle'
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-macos-x86_64

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'loomR', 'monocle'
Flavor: r-patched-solaris-x86

Version: 3.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [79s/117s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(Seurat)
     >
     > test_check("Seurat")
     ── 1. Error: (unknown) (@test_load_10X.R#34) ──────────────────────────────────
     HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
     class: HDF5
     major: Invalid arguments to routine
     minor: Inappropriate type
     Backtrace:
     1. Seurat::Load10X_Spatial(data.dir = "../testdata/visium")
     2. Seurat::Read10X_h5(...)
     4. hdf5r:::`[.H5D`(...)
     5. x$read(...)
     6. self$read_low_level(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 418 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: (unknown) (@test_load_10X.R#34)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 3.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'loomR', 'SingleCellExperiment', 'MAST', 'monocle'
Flavor: r-oldrel-macos-x86_64