CRAN Package Check Results for Package MOCHA

Last updated on 2024-04-23 05:58:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 1.26 2.17 3.43 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.0 20.54 213.86 234.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.0 424.37 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 430.30 NOTE
r-prerel-macos-arm64 1.1.0 7.00 ERROR
r-prerel-macos-x86_64 1.1.0 353.00 ERROR
r-prerel-windows-x86_64 1.1.0 23.00 403.00 426.00 NOTE
r-patched-linux-x86_64 1.1.0 22.22 295.84 318.06 NOTE
r-release-linux-x86_64 1.1.0 22.72 297.73 320.45 NOTE
r-release-macos-arm64 1.1.0 133.00 ERROR
r-release-macos-x86_64 1.1.0 251.00 ERROR
r-release-windows-x86_64 1.1.0 30.00 568.00 598.00 NOTE
r-oldrel-macos-arm64 1.1.0 11.00 ERROR
r-oldrel-windows-x86_64 1.1.0 32.00 537.00 569.00 NOTE

Additional issues

noSuggests

Check Details

Version: 1.1.0
Check: package dependencies
Result: ERROR Packages required but not available: 'plyranges', 'GenomicRanges', 'RaggedExperiment', 'MultiAssayExperiment', 'SummarizedExperiment', 'ggbio', 'AnnotationDbi', 'GenomeInfoDb', 'GenomicFeatures', 'ensembldb', 'BSgenome' Packages suggested but not available for checking: 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'org.Hs.eg.db', 'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR', 'rtracklayer' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArchR', 'motifmatchr', 'chromVAR' Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene' Imports includes 31 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene' Flavors: r-devel-linux-x86_64-fedora-gcc, r-prerel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: package dependencies
Result: ERROR Package required but not available: ‘ggbio’ Packages suggested but not available for checking: 'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-prerel-macos-arm64

Version: 1.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArchR', 'TxDb.Hsapiens.UCSC.hg38.refGene', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19' Flavor: r-prerel-macos-x86_64

Version: 1.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [85s/183s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ── Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed. You first need to install it, which you can do with: library(BiocManager) install("BSgenome.Hsapiens.UCSC.hg19") Backtrace: ▆ 1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3 2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome) 3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked) 4. └─BSgenome:::.stopOnAvailablePkg(genome) [ FAIL 2 | WARN 13 | SKIP 23 | PASS 21 ] Error: Test failures Execution halted Flavor: r-prerel-macos-x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘ArchR’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene', 'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR' Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 1.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [45s/63s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ── Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed. You first need to install it, which you can do with: library(BiocManager) install("BSgenome.Hsapiens.UCSC.hg19") Backtrace: ▆ 1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3 2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome) 3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked) 4. └─BSgenome:::.stopOnAvailablePkg(genome) [ FAIL 2 | WARN 14 | SKIP 23 | PASS 21 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Version: 1.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [73s/116s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test_exportOpenTiles.R:13:3'): exportDifferentials works on a 3 sample test dataset ── Error in `.stopOnAvailablePkg(genome)`: BSgenome.Hsapiens.UCSC.hg19 package is not currently installed. You first need to install it, which you can do with: library(BiocManager) install("BSgenome.Hsapiens.UCSC.hg19") Backtrace: ▆ 1. └─MOCHA::exportOpenTiles(...) at test_exportOpenTiles.R:13:3 2. └─BSgenome::getBSgenome(S4Vectors::metadata(SampleTileObject)$Genome) 3. └─BSgenome:::.getInstalledPkgnameFromGenome(genome, masked = masked) 4. └─BSgenome:::.stopOnAvailablePkg(genome) [ FAIL 2 | WARN 14 | SKIP 23 | PASS 21 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 1.1.0
Check: package dependencies
Result: ERROR Packages required but not available: 'plyranges', 'RaggedExperiment', 'MultiAssayExperiment', 'ggbio' Packages suggested but not available for checking: 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene', 'BSgenome.Hsapiens.UCSC.hg19', 'chromVAR' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64