ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.

Version: 2.0
Imports: stats, multtest, shiny
Published: 2017-12-05
Author: Jan Budczies, Eva Romanovsky
Maintainer: Jan Budczies <jan.budczies at charite.de>
License: GPL-3
NeedsCompilation: no
CRAN checks: ioncopy results

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Reference manual: ioncopy.pdf
Package source: ioncopy_2.0.tar.gz
Windows binaries: r-devel: ioncopy_2.0.zip, r-release: ioncopy_2.0.zip, r-oldrel: ioncopy_2.0.zip
OS X El Capitan binaries: r-release: ioncopy_2.0.tgz
OS X Mavericks binaries: r-oldrel: ioncopy_2.0.tgz
Old sources: ioncopy archive

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