CRAN Package Check Results for Package FLightR

Last updated on 2018-05-26 05:49:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.6 9.42 192.42 201.84 OK
r-devel-linux-x86_64-debian-gcc 0.4.6 5.19 143.27 148.46 ERROR
r-devel-linux-x86_64-fedora-clang 0.4.6 176.87 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.6 226.92 NOTE
r-devel-windows-ix86+x86_64 0.4.6 10.00 212.00 222.00 OK
r-patched-linux-x86_64 0.4.6 7.57 175.16 182.73 ERROR
r-patched-solaris-x86 0.4.6 340.30 NOTE
r-release-linux-x86_64 0.4.6 6.98 177.53 184.51 OK
r-release-windows-ix86+x86_64 0.4.6 15.00 278.00 293.00 OK
r-release-osx-x86_64 0.4.6 NOTE
r-oldrel-windows-ix86+x86_64 0.4.6 14.00 202.00 216.00 OK
r-oldrel-osx-x86_64 0.4.6 NOTE

Check Details

Version: 0.4.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [70s/106s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(FLightR)
     This is FLightR 0.4.6
     NB: All functions that started from plot.**.**() are renamed to plot_**_** in order to pass CRAN check
    
     > test_check("FLightR")
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
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     calibration method used: parametric.slope
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
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     calibration method used: parametric.slope
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
     stage 1...
     stage 2...
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
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     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
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     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 522.1627 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 309.5187 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 814.0323 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 701.8565 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 738.2148 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 745.3481 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 769.5617 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 906.8219 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 889.9593 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 902.9289 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 872.3763 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 621.9952 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 903.8202 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 936.0047 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 893.4716 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 917.529 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 912.7599 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 939.388 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 909.1338 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 871.163 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 923.0436 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 927.7144 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 904.6609 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 845.1733 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 951.6733 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 709.5617 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.66148
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
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     checking dusk 1
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     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 547.6905 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 328.0318 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 732.9508 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 635.2843 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 771.3606 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 817.7654 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 784.4216 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 912.126 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 896.3082 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 863.5059 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 909.6379 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 614.4899 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 890.8829 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 942.7616 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 895.7068 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 888.5471 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 909.34 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 950.8249 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 919.9572 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 864.8544 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 933.3798 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 941.2178 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 888.0057 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 837.5986 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 954.3902 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 750.7761 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.72398
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 494.4085 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 316.2641 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 791.8747 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 632.5555 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 772.3164 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 820.9002 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 806.4859 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 881.7706 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 894.4822 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 902.2045 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 837.646 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 543.922 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 819.2478 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 926.7632 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 915.3023 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 908.2967 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 898.112 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 949.7542 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 905.5216 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 873.9293 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 915.7926 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 944.6143 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 913.4734 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 839.0069 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 958.827 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 739.1464 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.69859
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 469.899 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 318.4776 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 817.0278 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 677.0836 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 729.2505 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 844.9367 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 807.0556 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 905.81 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 898.6458 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 879.0192 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 900.0376 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 563.5695 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 880.2773 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 941.0686 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 891.0475 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 899.1442 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 910.6091 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 943.4518 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 896.4325 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 838.9913 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 899.8361 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 940.2014 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 877.001 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 853.0689 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 952.6425 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 690.0978 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.78853
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     function will plot 27 twilights
     function will plot 27 twilights
     function will plot 27 twilights
     ── 1. Error: plot_util_distr_works (@test_data_result_summary_and_plotting.R#57)
     cannot open URL 'http://maps.googleapis.com/maps/api/staticmap?center=53.099988,5.25&zoom=5&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false'
     1: expect_warning(plot_util_distr(Result, zoom = 5, save = FALSE)) at testthat/test_data_result_summary_and_plotting.R:57
     2: quasi_capture(enquo(object), capture_warnings, label = label)
     3: capture(act$val <- eval_bare(get_expr(quo), get_env(quo)))
     4: withCallingHandlers(code, warning = function(condition) {
     out$push(condition)
     invokeRestart("muffleWarning")
     })
     5: eval_bare(get_expr(quo), get_env(quo))
     6: plot_util_distr(Result, zoom = 5, save = FALSE)
     7: do.call(ggmap::get_map, map.options)
     8: (function (location = c(lon = -95.3632715, lat = 29.7632836), zoom = "auto", scale = "auto",
     maptype = c("terrain", "terrain-background", "satellite", "roadmap", "hybrid",
     "toner", "watercolor", "terrain-labels", "terrain-lines", "toner-2010", "toner-2011",
     "toner-background", "toner-hybrid", "toner-labels", "toner-lines", "toner-lite"),
     source = c("google", "osm", "stamen", "cloudmade"), force = ifelse(source ==
     "google", TRUE, TRUE), messaging = FALSE, urlonly = FALSE, filename = "ggmapTemp",
     crop = TRUE, color = c("color", "bw"), language = "en-EN", api_key)
     {
     args <- as.list(match.call(expand.dots = TRUE)[-1])
     if ("verbose" %in% names(args)) {
     .Deprecated(msg = "verbose argument deprecated, use messaging.")
     messaging <- eval(args$verbose)
     }
     if ("center" %in% names(args)) {
     .Deprecated(msg = "center argument deprecated, use location.")
     location <- eval(args$center)
     }
     source <- match.arg(source)
     color <- match.arg(color)
     if (missing(maptype)) {
     if (source != "cloudmade") {
     maptype <- "terrain"
     }
     else {
     maptype <- 1
     }
     }
     if (source == "stamen") {
     if (!(maptype %in% c("terrain", "terrain-background", "terrain-labels", "terrain-lines",
     "toner", "toner-2010", "toner-2011", "toner-background", "toner-hybrid",
     "toner-labels", "toner-lines", "toner-lite", "watercolor"))) {
     stop("invalid stamen maptype, see ?get_stamenmap", call. = FALSE)
     }
     }
     if (source == "google" & (maptype %in% c("terrain-background", "terrain-labels",
     "terrain-lines", "toner", "toner-2010", "toner-2011", "toner-background",
     "toner-hybrid", "toner-labels", "toner-lines", "toner-lite", "watercolor"))) {
     message(paste0("maptype = \"", maptype, "\" is only available with source = \"stamen\"."))
     message(paste0("resetting to source = \"stamen\"..."))
     source <- "stamen"
     }
     location_stop <- TRUE
     if (is.character(location) && length(location) == 1) {
     location_type <- "address"
     location_stop <- FALSE
     }
     if (is.data.frame(location) && ncol(location) == 2) {
     location <- colMeans(location)
     }
     if (is.numeric(location) && length(location) == 2) {
     location_type <- "lonlat"
     location_stop <- FALSE
     if (!is.null(names(location))) {
     loc_names <- names(location)
     if (all(loc_names == c("long", "lat"))) {
     names(location) <- c("lon", "lat")
     }
     else if (all(loc_names == c("lat", "lon"))) {
     message("note : locations should be specified in the lon/lat format, not lat/lon.")
     location <- location[c("lon", "lat")]
     }
     else if (all(loc_names == c("lat", "long"))) {
     message("note : locations should be specified in the lon/lat format, not lat/lon.")
     location <- location[c("long", "lat")]
     names(location) <- c("lon", "lat")
     }
     }
     else {
     names(location) <- c("lon", "lat")
     }
     }
     if (is.numeric(location) && length(location) == 4) {
     location_type <- "bbox"
     location_stop <- FALSE
     if (length(names(location)) > 0) {
     if (!all(names(location) %in% c("left", "bottom", "right", "top"))) {
     stop("bounding boxes should have name left, bottom, right, top)",
     call. = FALSE)
     }
     location <- location[c("left", "bottom", "right", "top")]
     }
     else {
     names(location) <- c("left", "bottom", "right", "top")
     }
     }
     if (location_stop) {
     stop("improper location specification, see ?get_map.", call. = F)
     }
     if (zoom == "auto" && location_type == "bbox") {
     if (zoom == "auto") {
     lon_range <- location[c("left", "right")]
     lat_range <- location[c("bottom", "top")]
     if (missing(zoom)) {
     lonlength <- diff(lon_range)
     latlength <- diff(lat_range)
     zoomlon <- ceiling(log2(360 * 2/lonlength))
     zoomlat <- ceiling(log2(180 * 2/latlength))
     zoom <- max(zoomlon, zoomlat)
     }
     }
     }
     else if (zoom == "auto" && location_type != "bbox") {
     zoom = 10
     }
     if (scale == "auto") {
     if (source == "google")
     scale <- 2
     if (source == "osm")
     scale <- OSM_scale_lookup(zoom)
     }
     if (source == "google") {
     if (location_type == "bbox") {
     warning("bounding box given to google - spatial extent only approximate.",
     call. = FALSE, immediate. = TRUE)
     message("converting bounding box to center/zoom specification. (experimental)")
     user_bbox <- location
     location <- c(lon = mean(location[c("left", "right")]), lat = mean(location[c("bottom",
     "top")]))
     }
     map <- get_googlemap(center = location, zoom = zoom, maptype = maptype, scale = scale,
     messaging = messaging, urlonly = urlonly, force = force, filename = filename,
     color = color, language = language)
     if (FALSE) {
     bb <- attr(map, "bb")
     mbbox <- c(left = bb$ll.lon, bottom = bb$ll.lat, right = bb$ur.lon, top = bb$ur.lat)
     size <- dim(map)
     if (location_type == "bbox") {
     slon <- seq(mbbox["left"], mbbox["right"], length.out = size[1])
     slat <- seq(mbbox["top"], mbbox["bottom"], length.out = size[2])
     keep_x_ndcs <- which(user_bbox["left"] <= slon & slon <= user_bbox["right"])
     keep_y_ndcs <- which(user_bbox["bottom"] <= slat & slat <= user_bbox["top"])
     map <- map[keep_y_ndcs, keep_x_ndcs]
     class(map) <- c("ggmap", "raster")
     attr(map, "bb") <- data.frame(ll.lat = user_bbox["bottom"], ll.lon = user_bbox["left"],
     ur.lat = user_bbox["top"], ur.lon = user_bbox["right"])
     }
     }
     return(map)
     }
     if (source == "osm") {
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_openstreetmap(bbox = location, scale = scale, messaging = messaging,
     urlonly = urlonly, filename = filename, color = color))
     }
     if (source == "stamen") {
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_stamenmap(bbox = location, zoom = zoom, maptype = maptype, crop = crop,
     messaging = messaging, urlonly = urlonly, filename = filename, force = force,
     color = color))
     }
     if (source == "cloudmade") {
     if (missing(api_key))
     stop("an api key must be provided for cloudmade maps, see ?get_cloudmademap.",
     call. = FALSE)
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_cloudmademap(bbox = location, zoom = zoom, maptype = maptype,
     crop = crop, messaging = messaging, urlonly = urlonly, filename = filename,
     highres = TRUE, color = color, api_key = api_key))
     }
     })(zoom = 5, col = "bw", location = c(4.6155178, 52.71809615, 5.8844822, 53.4818792
     ))
     9: get_googlemap(center = location, zoom = zoom, maptype = maptype, scale = scale, messaging = messaging,
     urlonly = urlonly, force = force, filename = filename, color = color, language = language)
     10: download.file(url, destfile = tmp, quiet = !messaging, mode = "wb")
    
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 461.6826 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 323.8321 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 777.1904 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 639.9703 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 754.0993 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 799.4709 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 769.2844 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 898.1195 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 886.9331 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 884.4959 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 859.9099 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 593.5509 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 869.6941 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 942.5014 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 895.7307 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 900.406 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 901.6364 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 953.5816 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 930.2458 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 894.0729 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 925.7617 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 922.4172 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 893.6914 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 837.8496 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 955.9283 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 738.3786 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.79947
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     bird likely did not move, exiting without result
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 29 SKIPPED: 0 FAILED: 1
     1. Error: plot_util_distr_works (@test_data_result_summary_and_plotting.R#57)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.6
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rgdal’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.4.6
Check: tests
Result: ERROR
     Running ‘testthat.R’ [89s/114s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(FLightR)
     This is FLightR 0.4.6
     NB: All functions that started from plot.**.**() are renamed to plot_**_** in order to pass CRAN check
    
     > test_check("FLightR")
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dawn 14
     checking dawn 15
     checking dawn 16
     checking dawn 17
     checking dawn 18
     checking dawn 19
     checking dawn 20
     checking dawn 21
     checking dawn 22
     checking dawn 23
     checking dawn 24
     checking dawn 25
     checking dawn 26
     checking dawn 27
     checking dawn 28
     checking dawn 29
     checking dawn 30
     checking dawn 31
     checking dawn 32
     checking dawn 33
     checking dawn 34
     checking dawn 35
     checking dawn 36
     checking dawn 37
     checking dawn 38
     checking dawn 39
     checking dawn 40
     checking dawn 41
     checking dawn 42
     checking dawn 43
     checking dawn 44
     checking dawn 45
     checking dawn 46
     checking dawn 47
     checking dawn 48
     checking dawn 49
     checking dawn 50
     checking dawn 51
     checking dawn 52
     checking dawn 53
     checking dawn 54
     checking dawn 55
     checking dawn 56
     checking dawn 57
     checking dawn 58
     checking dawn 59
     checking dawn 60
     checking dawn 61
     checking dawn 62
     checking dawn 63
     checking dawn 64
     checking dawn 65
     checking dawn 66
     checking dawn 67
     checking dawn 68
     checking dawn 69
     checking dawn 70
     checking dawn 71
     checking dawn 72
     checking dawn 73
     checking dawn 74
     checking dawn 75
     checking dawn 76
     checking dawn 77
     checking dawn 78
     checking dawn 79
     checking dawn 80
     checking dawn 81
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     checking dusk 16
     checking dusk 17
     checking dusk 18
     checking dusk 19
     checking dusk 20
     checking dusk 21
     checking dusk 22
     checking dusk 23
     checking dusk 24
     checking dusk 25
     checking dusk 26
     checking dusk 27
     checking dusk 28
     checking dusk 29
     checking dusk 30
     checking dusk 31
     checking dusk 32
     checking dusk 33
     checking dusk 34
     checking dusk 35
     checking dusk 36
     checking dusk 37
     checking dusk 38
     checking dusk 39
     checking dusk 40
     checking dusk 41
     checking dusk 42
     checking dusk 43
     checking dusk 44
     checking dusk 45
     checking dusk 46
     checking dusk 47
     checking dusk 48
     checking dusk 49
     checking dusk 50
     checking dusk 51
     checking dusk 52
     checking dusk 53
     checking dusk 54
     checking dusk 55
     checking dusk 56
     checking dusk 57
     checking dusk 58
     checking dusk 59
     checking dusk 60
     checking dusk 61
     checking dusk 62
     checking dusk 63
     checking dusk 64
     checking dusk 65
     checking dusk 66
     checking dusk 67
     checking dusk 68
     checking dusk 69
     checking dusk 70
     checking dusk 71
     checking dusk 72
     checking dusk 73
     checking dusk 74
     checking dusk 75
     checking dusk 76
     checking dusk 77
     checking dusk 78
     checking dusk 79
     checking dusk 80
     checking dusk 81
     calibration method used: parametric.slope
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dawn 14
     checking dawn 15
     checking dawn 16
     checking dawn 17
     checking dawn 18
     checking dawn 19
     checking dawn 20
     checking dawn 21
     checking dawn 22
     checking dawn 23
     checking dawn 24
     checking dawn 25
     checking dawn 26
     checking dawn 27
     checking dawn 28
     checking dawn 29
     checking dawn 30
     checking dawn 31
     checking dawn 32
     checking dawn 33
     checking dawn 34
     checking dawn 35
     checking dawn 36
     checking dawn 37
     checking dawn 38
     checking dawn 39
     checking dawn 40
     checking dawn 41
     checking dawn 42
     checking dawn 43
     checking dawn 44
     checking dawn 45
     checking dawn 46
     checking dawn 47
     checking dawn 48
     checking dawn 49
     checking dawn 50
     checking dawn 51
     checking dawn 52
     checking dawn 53
     checking dawn 54
     checking dawn 55
     checking dawn 56
     checking dawn 57
     checking dawn 58
     checking dawn 59
     checking dawn 60
     checking dawn 61
     checking dawn 62
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     checking dusk 16
     checking dusk 17
     checking dusk 18
     checking dusk 19
     checking dusk 20
     checking dusk 21
     checking dusk 22
     checking dusk 23
     checking dusk 24
     checking dusk 25
     checking dusk 26
     checking dusk 27
     checking dusk 28
     checking dusk 29
     checking dusk 30
     checking dusk 31
     checking dusk 32
     checking dusk 33
     checking dusk 34
     checking dusk 35
     checking dusk 36
     checking dusk 37
     checking dusk 38
     checking dusk 39
     checking dusk 40
     checking dusk 41
     checking dusk 42
     checking dusk 43
     checking dusk 44
     checking dusk 45
     checking dusk 46
     checking dusk 47
     checking dusk 48
     checking dusk 49
     checking dusk 50
     checking dusk 51
     checking dusk 52
     checking dusk 53
     checking dusk 54
     checking dusk 55
     checking dusk 56
     checking dusk 57
     checking dusk 58
     checking dusk 59
     checking dusk 60
     checking dusk 61
     checking dusk 62
     checking dusk 63
     calibration method used: parametric.slope
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
     stage 1...
     stage 2...
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 484.8809 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 353.1679 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 833.2095 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 836.2745 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 849.2699 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 862.5026 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 830.166 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 913.4229 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 908.7612 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 882.9262 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 879.55 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 524.3876 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 865.4295 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 927.6183 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 889.7589 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 886.6172 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 886.8583 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 948.3973 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 919.8342 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 844.4323 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 909.5005 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 931.0699 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 913.7502 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 842.963 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 961.3127 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 726.1329 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.63468
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 439.0429 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 307.7932 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 727.6605 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 710.6271 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 781.9006 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 837.1334 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 833.198 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 899.669 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 887.9905 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 891.3709 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 874.4597 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 569.263 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 872.654 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 936.1794 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 867.7118 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 899.8249 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 902.6497 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 943.4788 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 925.6394 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 880.1384 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 930.567 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 928.6618 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 899.2928 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 843.0832 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 945.7015 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 668.5231 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.59001
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 518.1807 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 324.167 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 770.7627 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 662.6424 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 765.3358 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 846.4829 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 756.958 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 881.4298 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 905.4365 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 890.0974 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 871.8822 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 554.5852 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 870.8068 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 904.8705 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 890.8773 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 906.6083 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 896.4747 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 949.7125 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 909.129 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 850.3465 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 912.3474 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 952.5628 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 901.8448 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 859.4991 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 957.9234 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 708.7787 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.73115
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 467.7768 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 336.5217 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 764.0731 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 580.357 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 758.0036 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 810.0917 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 802.5027 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 903.3698 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 897.5683 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 869.4761 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 859.1873 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 532.7298 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 872.381 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 919.4524 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 902.2519 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 893.8334 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 908.3454 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 945.9017 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 894.3718 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 852.1071 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 921.1117 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 943.7407 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 903.4423 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 836.7734 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 948.695 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 698.1419 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.63205
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     function will plot 27 twilights
     function will plot 27 twilights
     function will plot 27 twilights
     ── 1. Error: plot_util_distr_works (@test_data_result_summary_and_plotting.R#57)
     cannot open URL 'http://maps.googleapis.com/maps/api/staticmap?center=53.099988,5.25&zoom=5&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false'
     1: expect_warning(plot_util_distr(Result, zoom = 5, save = FALSE)) at testthat/test_data_result_summary_and_plotting.R:57
     2: quasi_capture(enquo(object), capture_warnings, label = label)
     3: capture(act$val <- eval_bare(get_expr(quo), get_env(quo)))
     4: withCallingHandlers(code, warning = function(condition) {
     out$push(condition)
     invokeRestart("muffleWarning")
     })
     5: eval_bare(get_expr(quo), get_env(quo))
     6: plot_util_distr(Result, zoom = 5, save = FALSE)
     7: do.call(ggmap::get_map, map.options)
     8: (function (location = c(lon = -95.3632715, lat = 29.7632836), zoom = "auto", scale = "auto",
     maptype = c("terrain", "terrain-background", "satellite", "roadmap", "hybrid",
     "toner", "watercolor", "terrain-labels", "terrain-lines", "toner-2010", "toner-2011",
     "toner-background", "toner-hybrid", "toner-labels", "toner-lines", "toner-lite"),
     source = c("google", "osm", "stamen", "cloudmade"), force = ifelse(source ==
     "google", TRUE, TRUE), messaging = FALSE, urlonly = FALSE, filename = "ggmapTemp",
     crop = TRUE, color = c("color", "bw"), language = "en-EN", api_key)
     {
     args <- as.list(match.call(expand.dots = TRUE)[-1])
     if ("verbose" %in% names(args)) {
     .Deprecated(msg = "verbose argument deprecated, use messaging.")
     messaging <- eval(args$verbose)
     }
     if ("center" %in% names(args)) {
     .Deprecated(msg = "center argument deprecated, use location.")
     location <- eval(args$center)
     }
     source <- match.arg(source)
     color <- match.arg(color)
     if (missing(maptype)) {
     if (source != "cloudmade") {
     maptype <- "terrain"
     }
     else {
     maptype <- 1
     }
     }
     if (source == "stamen") {
     if (!(maptype %in% c("terrain", "terrain-background", "terrain-labels", "terrain-lines",
     "toner", "toner-2010", "toner-2011", "toner-background", "toner-hybrid",
     "toner-labels", "toner-lines", "toner-lite", "watercolor"))) {
     stop("invalid stamen maptype, see ?get_stamenmap", call. = FALSE)
     }
     }
     if (source == "google" & (maptype %in% c("terrain-background", "terrain-labels",
     "terrain-lines", "toner", "toner-2010", "toner-2011", "toner-background",
     "toner-hybrid", "toner-labels", "toner-lines", "toner-lite", "watercolor"))) {
     message(paste0("maptype = \"", maptype, "\" is only available with source = \"stamen\"."))
     message(paste0("resetting to source = \"stamen\"..."))
     source <- "stamen"
     }
     location_stop <- TRUE
     if (is.character(location) && length(location) == 1) {
     location_type <- "address"
     location_stop <- FALSE
     }
     if (is.data.frame(location) && ncol(location) == 2) {
     location <- colMeans(location)
     }
     if (is.numeric(location) && length(location) == 2) {
     location_type <- "lonlat"
     location_stop <- FALSE
     if (!is.null(names(location))) {
     loc_names <- names(location)
     if (all(loc_names == c("long", "lat"))) {
     names(location) <- c("lon", "lat")
     }
     else if (all(loc_names == c("lat", "lon"))) {
     message("note : locations should be specified in the lon/lat format, not lat/lon.")
     location <- location[c("lon", "lat")]
     }
     else if (all(loc_names == c("lat", "long"))) {
     message("note : locations should be specified in the lon/lat format, not lat/lon.")
     location <- location[c("long", "lat")]
     names(location) <- c("lon", "lat")
     }
     }
     else {
     names(location) <- c("lon", "lat")
     }
     }
     if (is.numeric(location) && length(location) == 4) {
     location_type <- "bbox"
     location_stop <- FALSE
     if (length(names(location)) > 0) {
     if (!all(names(location) %in% c("left", "bottom", "right", "top"))) {
     stop("bounding boxes should have name left, bottom, right, top)",
     call. = FALSE)
     }
     location <- location[c("left", "bottom", "right", "top")]
     }
     else {
     names(location) <- c("left", "bottom", "right", "top")
     }
     }
     if (location_stop) {
     stop("improper location specification, see ?get_map.", call. = F)
     }
     if (zoom == "auto" && location_type == "bbox") {
     if (zoom == "auto") {
     lon_range <- location[c("left", "right")]
     lat_range <- location[c("bottom", "top")]
     if (missing(zoom)) {
     lonlength <- diff(lon_range)
     latlength <- diff(lat_range)
     zoomlon <- ceiling(log2(360 * 2/lonlength))
     zoomlat <- ceiling(log2(180 * 2/latlength))
     zoom <- max(zoomlon, zoomlat)
     }
     }
     }
     else if (zoom == "auto" && location_type != "bbox") {
     zoom = 10
     }
     if (scale == "auto") {
     if (source == "google")
     scale <- 2
     if (source == "osm")
     scale <- OSM_scale_lookup(zoom)
     }
     if (source == "google") {
     if (location_type == "bbox") {
     warning("bounding box given to google - spatial extent only approximate.",
     call. = FALSE, immediate. = TRUE)
     message("converting bounding box to center/zoom specification. (experimental)")
     user_bbox <- location
     location <- c(lon = mean(location[c("left", "right")]), lat = mean(location[c("bottom",
     "top")]))
     }
     map <- get_googlemap(center = location, zoom = zoom, maptype = maptype, scale = scale,
     messaging = messaging, urlonly = urlonly, force = force, filename = filename,
     color = color, language = language)
     if (FALSE) {
     bb <- attr(map, "bb")
     mbbox <- c(left = bb$ll.lon, bottom = bb$ll.lat, right = bb$ur.lon, top = bb$ur.lat)
     size <- dim(map)
     if (location_type == "bbox") {
     slon <- seq(mbbox["left"], mbbox["right"], length.out = size[1])
     slat <- seq(mbbox["top"], mbbox["bottom"], length.out = size[2])
     keep_x_ndcs <- which(user_bbox["left"] <= slon & slon <= user_bbox["right"])
     keep_y_ndcs <- which(user_bbox["bottom"] <= slat & slat <= user_bbox["top"])
     map <- map[keep_y_ndcs, keep_x_ndcs]
     class(map) <- c("ggmap", "raster")
     attr(map, "bb") <- data.frame(ll.lat = user_bbox["bottom"], ll.lon = user_bbox["left"],
     ur.lat = user_bbox["top"], ur.lon = user_bbox["right"])
     }
     }
     return(map)
     }
     if (source == "osm") {
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_openstreetmap(bbox = location, scale = scale, messaging = messaging,
     urlonly = urlonly, filename = filename, color = color))
     }
     if (source == "stamen") {
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_stamenmap(bbox = location, zoom = zoom, maptype = maptype, crop = crop,
     messaging = messaging, urlonly = urlonly, filename = filename, force = force,
     color = color))
     }
     if (source == "cloudmade") {
     if (missing(api_key))
     stop("an api key must be provided for cloudmade maps, see ?get_cloudmademap.",
     call. = FALSE)
     if (location_type != "bbox") {
     gm <- get_googlemap(center = location, zoom = zoom, filename = filename)
     location <- as.numeric(attr(gm, "bb"))[c(2, 1, 4, 3)]
     }
     return(get_cloudmademap(bbox = location, zoom = zoom, maptype = maptype,
     crop = crop, messaging = messaging, urlonly = urlonly, filename = filename,
     highres = TRUE, color = color, api_key = api_key))
     }
     })(zoom = 5, col = "bw", location = c(4.6155178, 52.71809615, 5.8844822, 53.4818792
     ))
     9: get_googlemap(center = location, zoom = zoom, maptype = maptype, scale = scale, messaging = messaging,
     urlonly = urlonly, force = force, filename = filename, color = color, language = language)
     10: download.file(url, destfile = tmp, quiet = !messaging, mode = "wb")
    
     Detected Intigeo_Mode_1 tag
     Data found to be logtransformed
     tag saved data every 300 seconds, and is assumed to measure data every 60 seconds, and write down max
    
     checking dawn 1
     checking dawn 2
     checking dawn 3
     checking dawn 4
     checking dawn 5
     checking dawn 6
     checking dawn 7
     checking dawn 8
     checking dawn 9
     checking dawn 10
     checking dawn 11
     checking dawn 12
     checking dawn 13
     checking dusk 1
     checking dusk 2
     checking dusk 3
     checking dusk 4
     checking dusk 5
     checking dusk 6
     checking dusk 7
     checking dusk 8
     checking dusk 9
     checking dusk 10
     checking dusk 11
     checking dusk 12
     checking dusk 13
     checking dusk 14
     checking dusk 15
     calibration method used: parametric.slope
     likelihood correction turned off as no correction found in the calibration
     estimating dusks
     doing 1
     doing 11
     estimating dawns
     doing 1
     doing 11
     processing results
     smart filter is OFF
    
    
     ##########################
     Time.Period 1 of 27
     generating new particlesESS is 1000
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 2 of 27
     generating new particlesESS is 480.2373 - resampling 1
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 3 of 27
     generating new particlesESS is 343.8343 - resampling 2
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 4 of 27
     generating new particlesESS is 734.5274 - resampling 3
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 5 of 27
     generating new particlesESS is 831.3218 - resampling 4
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 6 of 27
     generating new particlesESS is 795.3091 - resampling 5
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 7 of 27
     generating new particlesESS is 889.551 - resampling 6
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 8 of 27
     generating new particlesESS is 838.2381 - resampling 7
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 9 of 27
     generating new particlesESS is 905.9616 - resampling 8
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 10 of 27
     generating new particlesESS is 925.617 - resampling 9
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 11 of 27
     generating new particlesESS is 881.6191 - resampling 10
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 12 of 27
     generating new particlesESS is 894.1541 - resampling 11
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 13 of 27
     generating new particlesESS is 510.7076 - resampling 12
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 14 of 27
     generating new particlesESS is 853.2843 - resampling 13
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 15 of 27
     generating new particlesESS is 931.1268 - resampling 14
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 16 of 27
     generating new particlesESS is 876.3087 - resampling 15
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 17 of 27
     generating new particlesESS is 898.4655 - resampling 16
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 18 of 27
     generating new particlesESS is 910.0714 - resampling 17
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 19 of 27
     generating new particlesESS is 922.0196 - resampling 18
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 20 of 27
     generating new particlesESS is 911.2558 - resampling 19
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 21 of 27
     generating new particlesESS is 840.8175 - resampling 20
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 22 of 27
     generating new particlesESS is 892.7195 - resampling 21
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 23 of 27
     generating new particlesESS is 935.036 - resampling 22
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 24 of 27
     generating new particlesESS is 925.7606 - resampling 23
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 25 of 27
     generating new particlesESS is 810.762 - resampling 24
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 26 of 27
     generating new particlesESS is 966.0224 - resampling 25
     unique P in point leaving stack 1
     creating stack
    
    
     ##########################
     Time.Period 27 of 27
     generating new particlesESS is 693.0606 - resampling 26
     unique P in point leaving stack 1
     creating stack
     adding last points form the stack to the resutls
     +----------------------------------+
     | estimated negative Log Likelihood is -11.61001
     +----------------------------------+
     estimating results object
     estimating quantiles for positions
     adding 95% credibility intervals to medians
     estimating distances
     estimating directions
     estimating mean directions and kappas
     estimating kappas
     estimating mean dists
     estimating probs of migration
     estimating median dists
     creating output DONE!
     DONE!
     bird likely did not move, exiting without result
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 29 SKIPPED: 0 FAILED: 1
     1. Error: plot_util_distr_works (@test_data_result_summary_and_plotting.R#57)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64